Hi Pete,
This night I spend testing things why that happened.
That appeared to be randomly, however when I was doing events on ivao with lads on saturdays everything was fine I could land manualy. So I decided to check what I'm doing that is working on events or rather what I am not doing, so, during events I have opened webeye internet tv in a browser FSX Active Sky Next, ivap and I switched off USB and Hid devices on a power tab to prevent windows to switch off usb devices on sleep. While I'm flying alone doesnt metter offline online, I'm starting from time to time FSCommander, or I'm starting it in the begining before fsx or after fsx or during the flight, at this very moment when I'm writing to you I'm flying without it didn't start FSCommander and there is an hour of flight and I still can move my joystick - Thrustmaster T16000M(checked as well with game pad). This night I was testing it and after starting FSC controllers were gone. Couldn't find a pattern becouse I didn't even think about that this might be the issue. Maybe FSCommander use FSUIPC's same code as joystick axism and then Controllers are gone maybe you could override this somehow. While typing checking controller and is working. Now lets start FSCommander, haha I wanted to check where am I and switched first FSX map and they stopped working, this is amazing, when you don't turn any other kind of map its working after not - dint manage to start fsc.