I have the same issue but perhaps even a bit more severe than the others in here, since the build from page 1 in this thread actually crashes and dies when the disconnect happens.
It seems to me that it disconnects after a certain amount of data sent to flightsim: If I'm on autopilot and basically not touching the controls, it can live for hours -- if I'm doing crazy flights up rivers and under bridges and whatnot, it can crash in less than a minute. Almost makes me guess that Asobo is profiling simconnect data and have a counter that overflows or something.
Anyway, I have some logs for you, if you want them -- both fsuipcs logs from the debug build in this thread, and from the release of the 28th of august (they identify themselves as the same version in the logs, that's maybe not ideal), along with their respective simconnect logs..
However, these logs are larger than the forum will let me attach, and I don't feel like having pointers to any of my own ways of sharing files dangling around on the internet. But I can PM you a URL if you want.